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Acta Physiologica Congress

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Acta Physiologica 2007; Volume 189, Supplement 653
The 86th Annual Meeting of The German Physiological Society
3/25/2007-3/28/2007
Hannover, Germany


THE WHOLE AND THE PARTS: DEVELOPMENT AND VALIDATION OF COMPUTATIONAL MODELS OF CELLULAR INTERACTION
Abstract number: S08-3

Smallwood1 R

1University of Sheffield, Department of Computer Science

The aim of the Epitheliome Project (http://www.epitheliome.com) is to develop a computational model of cell behaviour within the context of tissue architecture, differentiation, wound repair and malignancy. The biological models used as exemplars are in vitro models of skin (Professor Sheila Mac Neil, Sheffield) and urothelium (Professor Jenny Southgate, York). An individual- based modelling paradigm is used in which there is a 1:1 mapping between biological entities (cells, protein molecules, receptors etc) and the software agents (specifically, communicating stream X-machines) which are used to represent them in silico. The modelling framework is publicly available (http://www.flame.ac.uk). The presentation will describe the modelling process, starting with a natural language description of the problem, and leading to an in silico representation of cellular interaction, and will compare the behaviour of biological and computational models.

To cite this abstract, please use the following information:
Acta Physiologica 2007; Volume 189, Supplement 653 :S08-3

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